Pre-launch — the competition is being finalised and details on this site may change.

BioKG-Align
Data

Public graph package, hidden-label evaluation

Five ontologies — NCIT, DOID, ORDO, SNOMED, FMA — are projected into one knowledge graph. Public train (60%) and validation (10%) carry gold labels; the private test split (30%) releases candidates with gold withheld.

What's in the package

Public release files and their purpose
Path Purpose
graph/triples.csv Typed intra-ontology graph triples and the released training anchors.
graph/properties.csv Node identifiers, ontology membership, labels, synonyms, definitions, and permitted metadata.
graph/*.dl, graph/*.facts, graph/datalog_terms.tsv The OWL 2 RL Datalog bundle: facts.dl (a Soufflé .input driver) with one <relation>.facts TSV per fact relation, owl2rl_core.dl (rule core), rules.dl (closure driver), conflict_rules.dl (conflict driver), the datalog_terms.tsv symbol dictionary and datalog_schema.json.
alignments/{train,valid}.tsv Public supervised labels with their relation types.
tasks/*/*.cands.tsv Candidate files for train, validation, and test queries.
tasks/*/{train,valid}.preferred.tsv One preferred (target, relation) gold per query; drives the Preferred Typed (Relation-Aware) MRR.
tasks/*/{train,valid}.graded.tsv Graded relevance over (candidate, relation) pairs, from the preferred pairs and the target-ontology hierarchy; drives Hierarchy-Aware Typed nDCG@10.
evaluation/* Sample submission, submission schema, and the local scorer. Kit scoring available; CodaBench integration in preparation. Provisional
baseline_predictions/* Organiser baseline-system predictions on the test split.
data_card.md, *_manifest.json, reports/ The data card, licence and release manifests, and dataset reports.

Released as CSV, TSV, Datalog, JSON. The kit's data card is the authoritative inventory and file-format reference.

Ontology licences

Licence for each track ontology
Ontology Licence
NCIT CC BY 4.0
DOID CC0 1.0
ORDO CC BY 4.0
FMA FMA License (redistribution terms apply)
SNOMED SNOMED CT Affiliate License (redistribution terms apply)

Hosting & distribution

The dataset is distributed as a standalone public artefact, planned as a Hugging Face dataset release with an offline archive on Zenodo; the DOI is not yet finalised. Provisional